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An ant colony optimization approach for phylogenetic tree reconstruction problem

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Nội dung chi tiết: An ant colony optimization approach for phylogenetic tree reconstruction problem

An ant colony optimization approach for phylogenetic tree reconstruction problem

Vietnam National University, Hanoi College of TechnologyHuy Quang DinhAn Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction Problem

An ant colony optimization approach for phylogenetic tree reconstruction problem mMajor : Information Technology Code : 1.01.10MASTER. THESISAdvisor : Prof. Arndt von Haeseler Co-Ad visor : Dr. Hoang Xuan HuanHanoi - December. 2006

ContentsAbstractHiDeclaration>vAcknowledgementsv1Introduction11.1Motivation.................................................. 111 1 Computational Biol An ant colony optimization approach for phylogenetic tree reconstruction problem

ogy................................. 11.1.2Phylogeny Reconstruction.............................. 21.2Thesis Works and Structure......................

An ant colony optimization approach for phylogenetic tree reconstruction problem

............ 32Phylogenetic Tree Reconstruction42.1Phylogenetic Trees.......................................... 42.2Sequence Alignment ...............

Vietnam National University, Hanoi College of TechnologyHuy Quang DinhAn Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction Problem

An ant colony optimization approach for phylogenetic tree reconstruction problem 2.3Approaches for phylogeny reconstruction.................... 112.4Maximum Parsimony Principle ............................... 112.4.1Parsimony Conce

pt.................................... 112.4.2Counting evolutionary changes........................ 122.4.3Remarks on Maximum Parsimony Approaches.... An ant colony optimization approach for phylogenetic tree reconstruction problem

.......... 142.5Finding the best tree by heuristic searches................ 152.5.1Sequential Addition Methods.......................... 1525.2 Tree A

An ant colony optimization approach for phylogenetic tree reconstruction problem

rrangement Methods............................. 16vjContents______________________________________________________________ vii2.5.3Other heuristic se

Vietnam National University, Hanoi College of TechnologyHuy Quang DinhAn Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction Problem

An ant colony optimization approach for phylogenetic tree reconstruction problem idge experiments.................................203.1.2Ant System................................................22

Vietnam National University, Hanoi College of TechnologyHuy Quang DinhAn Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction Problem

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