Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses
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Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses
PROTEIN TYPE SPECIFIC AMINO ACID SUBSTITUTION -MODELS FOR INFLUENZAVIRUSESA ThesisSubmitted for the degree ofMASTER OF COMPUTER SCIENCE IN THE FACULTY Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses Y OF INFORMATION TECHNOLOGY BY Nguyen Van SauInformation Technology University of Engineering and Technology Vietnam National University Hanoi. 144 Xuan Thuy, Ha Noi. Viet Nam MAY 2012© (Sau Nguyen Van). 2012 All rights reserveACKNOWLEDGMENTSI would like to thank my thesis supervisor Le Sy Vinh for Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses fruitful discussions, excellent advises and friendly behavior.I also express my thanks to Hanoi, Water Resources University for their continuous suppoLuận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses
rt where I am working.I want to thank Prof. Hoang Xuan Huan to introduce me to Bioinformatics and thank Dang Cao Cuong for supporting me a lot throughPROTEIN TYPE SPECIFIC AMINO ACID SUBSTITUTION -MODELS FOR INFLUENZAVIRUSESA ThesisSubmitted for the degree ofMASTER OF COMPUTER SCIENCE IN THE FACULTY Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses en published in the following articles:1. Nguyen Van Sau. Dang Cao Cuong, Le Si Quang. Le Sy Vinli. "Protein Type Specific Amino Acid Substitution Models for Influenza Viruses." KSE. pp.98-103, 2011. Third International Conference on Knowledge and Systems Engineering, 20ỈỈContentsACKNOWLEDGMENTS.... Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses ..................................................ILIST OF FIGURES......................................................1LIST OF TABLES...............Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses
........................................2NOTATIONS ABBREVIATIONS..............................................3ORIGINALITY STATEMENT..................PROTEIN TYPE SPECIFIC AMINO ACID SUBSTITUTION -MODELS FOR INFLUENZAVIRUSESA ThesisSubmitted for the degree ofMASTER OF COMPUTER SCIENCE IN THE FACULTY Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses ....................61.1Motivation.......................................................61.2Organization of this thesis......................................7CHAPTER 2. AMINO ACID SUBSTITUTION MODELS............................92.1Amino acid sequences.............................................92. Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses 2Amino-acid substitution models..................................10CHAPTER 3. METHODS TO ESTIMATE MODELS...............................134.1Methods...Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses
......................................................134.1.1Counting methods............................................134.1.2Maximum likelihood metPROTEIN TYPE SPECIFIC AMINO ACID SUBSTITUTION -MODELS FOR INFLUENZAVIRUSESA ThesisSubmitted for the degree ofMASTER OF COMPUTER SCIENCE IN THE FACULTY Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses lecting data.................................................213.2Categorizing data...............................................233.3Splitting data..................................................27 Luận văn thạc sĩ protein type specific amino acid substitution models for influenza viruses PROTEIN TYPE SPECIFIC AMINO ACID SUBSTITUTION -MODELS FOR INFLUENZAVIRUSESA ThesisSubmitted for the degree ofMASTER OF COMPUTER SCIENCE IN THE FACULTYGọi ngay
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